J5_4W29_020
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4W29|1|DA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W29_020 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.2168
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4W29|1|DA|C|584
4W29|1|DA|G|585
4W29|1|DA|A|586
4W29|1|DA|C|587
4W29|1|DA|U|588
4W29|1|DA|C|589
*
4W29|1|DA|G|668
4W29|1|DA|G|669
4W29|1|DA|A|670
4W29|1|DA|C|671
*
4W29|1|DA|G|809
4W29|1|DA|U|810
4W29|1|DA|U|811
4W29|1|DA|C|812
*
4W29|1|DA|G|1195
4W29|1|DA|C|1196
*
4W29|1|DA|G|1250
4W29|1|DA|C|1251
4W29|1|DA|G|1252
4W29|1|DA|A|1253
4W29|1|DA|A|1254
4W29|1|DA|U|1255
4W29|1|DA|G|1256
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D8
- 50S ribosomal protein L35
- Chain DF
- 50S ribosomal protein L4
- Chain DP
- 50S ribosomal protein L15
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
Coloring options: