J5_4WQY_010

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WQY|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQY_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0494

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WQY|1|CA|C|47
4WQY|1|CA|G|48
4WQY|1|CA|A|49
4WQY|1|CA|U|50
4WQY|1|CA|G|51
4WQY|1|CA|A|52
4WQY|1|CA|A|53
4WQY|1|CA|G|54
*
4WQY|1|CA|C|116
4WQY|1|CA|G|117
4WQY|1|CA|A|118
4WQY|1|CA|A|119
4WQY|1|CA|U|120
4WQY|1|CA|G|121
*
4WQY|1|CA|C|130
4WQY|1|CA|G|131
*
4WQY|1|CA|C|148
4WQY|1|CA|A|149
4WQY|1|CA|C|150
*
4WQY|1|CA|G|176
4WQY|1|CA|G|177
4WQY|1|CA|G|178

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23