J5_4WT8_012
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4WT8|1|D1|A|556, 4WT8|1|D1|U|584
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WT8_012 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1162
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WT8|1|D1|C|555
4WT8|1|D1|A|556
4WT8|1|D1|G|557
*
4WT8|1|D1|C|582
4WT8|1|D1|G|583
4WT8|1|D1|U|584
4WT8|1|D1|G|585
4WT8|1|D1|C|586
*
4WT8|1|D1|G|599
4WT8|1|D1|A|600
4WT8|1|D1|G|601
*
4WT8|1|D1|C|1306
4WT8|1|D1|A|1307
*
4WT8|1|D1|U|2038
4WT8|1|D1|G|2039
Current chains
- Chain D1
- 23S rRNA (2899-MER)
Nearby chains
- Chain D6
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L4
- Chain DT
- 50S ribosomal protein L20
- Chain DU
- 50S ribosomal protein L21
- Chain DW
- 50S ribosomal protein L22
Coloring options: