J5_4WT8_013
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4WT8|1|D1|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WT8_013 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1037
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4WT8|1|D1|C|606
4WT8|1|D1|G|607
4WT8|1|D1|A|608
4WT8|1|D1|C|609
4WT8|1|D1|U|610
4WT8|1|D1|C|611
*
4WT8|1|D1|G|714
4WT8|1|D1|G|715
4WT8|1|D1|A|716
4WT8|1|D1|C|717
*
4WT8|1|D1|G|855
4WT8|1|D1|U|856
4WT8|1|D1|U|857
4WT8|1|D1|C|858
*
4WT8|1|D1|G|1239
4WT8|1|D1|C|1240
*
4WT8|1|D1|G|1295
4WT8|1|D1|C|1296
4WT8|1|D1|G|1297
4WT8|1|D1|A|1298
4WT8|1|D1|A|1299
4WT8|1|D1|U|1300
4WT8|1|D1|G|1301
Current chains
- Chain D1
- 23S rRNA (2899-MER)
Nearby chains
- Chain D9
- 50S ribosomal protein L35
- Chain DD
- 50S ribosomal protein L4
- Chain DO
- 50S ribosomal protein L15
- Chain DT
- 50S ribosomal protein L20
- Chain DU
- 50S ribosomal protein L21
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