J5_4XEJ_005
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4XEJ|1|A23S|A|532, 4XEJ|1|A23S|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4XEJ_005 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0974
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4XEJ|1|A23S|C|531
4XEJ|1|A23S|A|532
4XEJ|1|A23S|G|533
*
4XEJ|1|A23S|C|560
4XEJ|1|A23S|G|561
4XEJ|1|A23S|U|562
4XEJ|1|A23S|G|563
4XEJ|1|A23S|C|564
*
4XEJ|1|A23S|G|577
4XEJ|1|A23S|A|578
4XEJ|1|A23S|G|579
*
4XEJ|1|A23S|C|1261
4XEJ|1|A23S|A|1262
*
4XEJ|1|A23S|U|2017
4XEJ|1|A23S|G|2018
Current chains
- Chain A23S
- 23S ribosomal RNA
Nearby chains
- Chain AL04
- 50S ribosomal protein L4
- Chain AL13
- 50S ribosomal protein L13
- Chain AL20
- 50S ribosomal protein L20
- Chain AL21
- 50S ribosomal protein L21
- Chain AL22
- 50S ribosomal protein L22
- Chain AL32
- 50S ribosomal protein L32
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