J5_5AKA_003
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5AKA|1|B|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AKA_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.061
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5AKA|1|B|C|584
5AKA|1|B|G|585
5AKA|1|B|A|586
5AKA|1|B|C|587
5AKA|1|B|U|588
5AKA|1|B|U|589
*
5AKA|1|B|A|668
5AKA|1|B|G|669
5AKA|1|B|A|670
5AKA|1|B|C|671
*
5AKA|1|B|G|809
5AKA|1|B|U|810
5AKA|1|B|U|811
5AKA|1|B|C|812
*
5AKA|1|B|G|1195
5AKA|1|B|C|1196
*
5AKA|1|B|G|1250
5AKA|1|B|C|1251
5AKA|1|B|G|1252
5AKA|1|B|A|1253
5AKA|1|B|A|1254
5AKA|1|B|U|1255
5AKA|1|B|G|1256
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
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