J5_5D8B_013
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5D8B|1|ZC|A|532, 5D8B|1|ZC|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5D8B_013 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1181
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5D8B|1|ZC|C|531
5D8B|1|ZC|A|532
5D8B|1|ZC|G|533
*
5D8B|1|ZC|C|560
5D8B|1|ZC|G|561
5D8B|1|ZC|U|562
5D8B|1|ZC|G|563
5D8B|1|ZC|C|564
*
5D8B|1|ZC|G|577
5D8B|1|ZC|A|578
5D8B|1|ZC|G|579
*
5D8B|1|ZC|C|1261
5D8B|1|ZC|A|1262
*
5D8B|1|ZC|U|2017
5D8B|1|ZC|G|2018
Current chains
- Chain ZC
- 23S ribosomal RNA
Nearby chains
- Chain DB
- 50S ribosomal protein L13
- Chain KB
- 50S ribosomal protein L20
- Chain LB
- 50S ribosomal protein L21
- Chain MB
- 50S ribosomal protein L22
- Chain UB
- 50S ribosomal protein L32
- Chain YA
- 50S ribosomal protein L4
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