J5_5IMR_001

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IMR_001 not in the Motif Atlas

Homologous match to J5_6CZR_020

Geometric discrepancy: 0.2584

The information below is about J5_6CZR_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_42859.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-F-F-cWW-tSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5IMR|1|A|C|36
5IMR|1|A|U|37
5IMR|1|A|G|38
5IMR|1|A|G|39
*
5IMR|1|A|C|403
5IMR|1|A|U|404
5IMR|1|A|U|405
5IMR|1|A|G|406
*
5IMR|1|A|C|436
5IMR|1|A|U|437
5IMR|1|A|G|438
5IMR|1|A|A|439
5IMR|1|A|A|440
5IMR|1|A|C|442
*
5IMR|1|A|G|492
5IMR|1|A|G|493
5IMR|1|A|U|494
5IMR|1|A|A|495
5IMR|1|A|A|496
5IMR|1|A|U|497
5IMR|1|A|A|498
5IMR|1|A|G|500
*
5IMR|1|A|C|545
5IMR|1|A|G|546
5IMR|1|A|A|547
5IMR|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S4

Chain P

30S ribosomal protein S12