J5_5J8B_001

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5J8B|1|A|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J8B_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0517

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J8B|1|A|C|45
5J8B|1|A|G|46
5J8B|1|A|A|47
5J8B|1|A|U|48
5J8B|1|A|G|49
5J8B|1|A|A|50
5J8B|1|A|A|51
5J8B|1|A|G|52
*
5J8B|1|A|C|113
5J8B|1|A|G|114
5J8B|1|A|A|115
5J8B|1|A|A|116
5J8B|1|A|U|117
5J8B|1|A|G|118
*
5J8B|1|A|C|127
5J8B|1|A|G|128
*
5J8B|1|A|C|147
5J8B|1|A|A|148
5J8B|1|A|C|149
*
5J8B|1|A|G|164
5J8B|1|A|G|165
5J8B|1|A|G|166

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23