J5_5J8B_003
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5J8B|1|A|A|556, 5J8B|1|A|U|584
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J8B_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0557
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J8B|1|A|C|555
5J8B|1|A|A|556
5J8B|1|A|G|557
*
5J8B|1|A|C|582
5J8B|1|A|G|583
5J8B|1|A|U|584
5J8B|1|A|G|585
5J8B|1|A|C|586
*
5J8B|1|A|G|599
5J8B|1|A|A|600
5J8B|1|A|G|601
*
5J8B|1|A|C|1306
5J8B|1|A|A|1307
*
5J8B|1|A|U|2038
5J8B|1|A|G|2039
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L22
Coloring options: