J5_5LZB_006

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

5LZB|1|A|U|2076, 5LZB|1|A|G|2428, 5LZB|1|A|G|2429, 5LZB|1|A|A|2430, 5LZB|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LZB_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.137

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LZB|1|A|U|2074
5LZB|1|A|U|2075
5LZB|1|A|U|2076
5LZB|1|A|A|2077
*
5LZB|1|A|U|2243
5LZB|1|A|U|2244
5LZB|1|A|U|2245
5LZB|1|A|G|2246
*
5LZB|1|A|C|2258
5LZB|1|A|U|2259
*
5LZB|1|A|A|2281
5LZB|1|A|G|2282
*
5LZB|1|A|C|2427
5LZB|1|A|G|2428
5LZB|1|A|G|2429
5LZB|1|A|A|2430
5LZB|1|A|U|2431
5LZB|1|A|A|2432
5LZB|1|A|A|2433
5LZB|1|A|A|2434
5LZB|1|A|A|2435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain X

50S ribosomal protein L28

Chain w

CCA 3' end of E-site tRNASec (low occupancy)