J5_5LZY_006
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 5LZY|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LZY_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0854
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LZY|1|9|C|30
5LZY|1|9|U|31
5LZY|1|9|U|32
5LZY|1|9|G|33
5LZY|1|9|U|34
*
5LZY|1|9|A|521
5LZY|1|9|A|522
5LZY|1|9|A|523
5LZY|1|9|U|524
5LZY|1|9|A|525
5LZY|1|9|A|526
5LZY|1|9|C|527
*
5LZY|1|9|G|558
5LZY|1|9|G|559
5LZY|1|9|A|560
5LZY|1|9|A|561
5LZY|1|9|U|562
5LZY|1|9|G|563
*
5LZY|1|9|C|592
5LZY|1|9|C|593
5LZY|1|9|A|594
5LZY|1|9|U|595
*
5LZY|1|9|A|641
5LZY|1|9|U|642
5LZY|1|9|A|643
5LZY|1|9|G|644
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- uS12
- Chain ee
- eS30
- Chain jj
- HBS1-like protein
Coloring options: