J5_5MMI_001

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGGAAG*CGAAUA*UU*GAAC*GAG

Length

23 nucleotides

Bulged bases

5MMI|1|A|G|49, 5MMI|1|A|A|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MMI_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1709

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|C|46
5MMI|1|A|G|47
5MMI|1|A|A|48
5MMI|1|A|G|49
5MMI|1|A|G|50
5MMI|1|A|A|51
5MMI|1|A|A|52
5MMI|1|A|G|53
*
5MMI|1|A|C|114
5MMI|1|A|G|115
5MMI|1|A|A|116
5MMI|1|A|A|117
5MMI|1|A|U|118
5MMI|1|A|A|119
*
5MMI|1|A|U|128
5MMI|1|A|U|129
*
5MMI|1|A|G|132
5MMI|1|A|A|133
5MMI|1|A|A|134
5MMI|1|A|C|135
*
5MMI|1|A|G|161
5MMI|1|A|A|162
5MMI|1|A|G|163

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34, chloroplastic

Chain U

50S ribosomal protein L23, chloroplastic

Chain Z

plastid ribosomal protein uL29c