J5_5MMI_007
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUC*GG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5MMI|1|A|U|2090, 5MMI|1|A|G|2445, 5MMI|1|A|G|2446, 5MMI|1|A|A|2447, 5MMI|1|A|U|2448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MMI_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0981
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MMI|1|A|U|2088
5MMI|1|A|U|2089
5MMI|1|A|U|2090
5MMI|1|A|A|2091
*
5MMI|1|A|U|2260
5MMI|1|A|U|2261
5MMI|1|A|U|2262
5MMI|1|A|C|2263
*
5MMI|1|A|G|2275
5MMI|1|A|G|2276
*
5MMI|1|A|C|2298
5MMI|1|A|G|2299
*
5MMI|1|A|C|2444
5MMI|1|A|G|2445
5MMI|1|A|G|2446
5MMI|1|A|A|2447
5MMI|1|A|U|2448
5MMI|1|A|A|2449
5MMI|1|A|A|2450
5MMI|1|A|A|2451
5MMI|1|A|A|2452
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain C
- 50S ribosomal protein L2, chloroplastic
- Chain M
- plastid ribosomal protein uL15c
- Chain X
- plastid ribosomal protein bL27c
- Chain Y
- plastid ribosomal protein bL28c
- Chain z
- E-site tRNA
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