J5_5NGM_001

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

5NGM|1|AA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NGM_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.104

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|C|47
5NGM|1|AA|G|48
5NGM|1|AA|A|49
5NGM|1|AA|U|50
5NGM|1|AA|G|51
5NGM|1|AA|A|52
5NGM|1|AA|A|53
5NGM|1|AA|G|54
*
5NGM|1|AA|C|115
5NGM|1|AA|G|116
5NGM|1|AA|A|117
5NGM|1|AA|A|118
5NGM|1|AA|U|119
5NGM|1|AA|G|120
*
5NGM|1|AA|C|129
5NGM|1|AA|A|130
*
5NGM|1|AA|U|149
5NGM|1|AA|A|150
5NGM|1|AA|U|151
*
5NGM|1|AA|A|178
5NGM|1|AA|A|179
5NGM|1|AA|G|180

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AR

50S ribosomal protein L23