J5_5NJT_003
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 5NJT|1|U|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_003 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.1315
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NJT|1|U|C|47
5NJT|1|U|G|48
5NJT|1|U|A|49
5NJT|1|U|U|50
5NJT|1|U|G|51
5NJT|1|U|A|52
5NJT|1|U|A|53
5NJT|1|U|G|54
*
5NJT|1|U|C|115
5NJT|1|U|G|116
5NJT|1|U|A|117
5NJT|1|U|A|118
5NJT|1|U|U|119
5NJT|1|U|G|120
*
5NJT|1|U|C|129
5NJT|1|U|A|130
*
5NJT|1|U|U|149
5NJT|1|U|A|150
5NJT|1|U|U|151
*
5NJT|1|U|A|178
5NJT|1|U|A|179
5NJT|1|U|G|180
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
Coloring options: