J5_5NJT_005
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 5NJT|1|U|A|578, 5NJT|1|U|U|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_005 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.1191
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|U|U|577
5NJT|1|U|A|578
5NJT|1|U|G|579
*
5NJT|1|U|C|604
5NJT|1|U|G|605
5NJT|1|U|U|606
5NJT|1|U|G|607
5NJT|1|U|C|608
*
5NJT|1|U|G|621
5NJT|1|U|A|622
5NJT|1|U|A|623
*
5NJT|1|U|U|1301
5NJT|1|U|A|1302
*
5NJT|1|U|U|2046
5NJT|1|U|A|2047
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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