J5_5NJT_009
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5NJT|1|U|U|2105, 5NJT|1|U|G|2457, 5NJT|1|U|G|2458, 5NJT|1|U|A|2459, 5NJT|1|U|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1318
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|U|2103
5NJT|1|U|U|2104
5NJT|1|U|U|2105
5NJT|1|U|A|2106
*
5NJT|1|U|U|2272
5NJT|1|U|U|2273
5NJT|1|U|U|2274
5NJT|1|U|G|2275
*
5NJT|1|U|C|2287
5NJT|1|U|G|2288
*
5NJT|1|U|C|2310
5NJT|1|U|G|2311
*
5NJT|1|U|C|2456
5NJT|1|U|G|2457
5NJT|1|U|G|2458
5NJT|1|U|A|2459
5NJT|1|U|U|2460
5NJT|1|U|A|2461
5NJT|1|U|A|2462
5NJT|1|U|A|2463
5NJT|1|U|A|2464
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain e
- 50S ribosomal protein L15
- Chain o
- 50S ribosomal protein L27
- Chain s
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L28
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