J5_5O60_001

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5O60|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5O60_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0878

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5O60|1|A|C|44
5O60|1|A|G|45
5O60|1|A|A|46
5O60|1|A|U|47
5O60|1|A|G|48
5O60|1|A|A|49
5O60|1|A|A|50
5O60|1|A|G|51
*
5O60|1|A|C|113
5O60|1|A|G|114
5O60|1|A|A|115
5O60|1|A|A|116
5O60|1|A|U|117
5O60|1|A|G|118
*
5O60|1|A|C|127
5O60|1|A|G|128
*
5O60|1|A|C|147
5O60|1|A|A|148
5O60|1|A|C|149
*
5O60|1|A|G|175
5O60|1|A|G|176
5O60|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34