J5_5TCU_008

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

5TCU|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5TCU_008 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1222

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|C|47
5TCU|1|B|A|48
5TCU|1|B|A|49
5TCU|1|B|U|50
5TCU|1|B|G|51
5TCU|1|B|A|52
5TCU|1|B|A|53
5TCU|1|B|G|54
*
5TCU|1|B|C|115
5TCU|1|B|G|116
5TCU|1|B|A|117
5TCU|1|B|A|118
5TCU|1|B|U|119
5TCU|1|B|G|120
*
5TCU|1|B|C|129
5TCU|1|B|A|130
*
5TCU|1|B|U|149
5TCU|1|B|A|150
5TCU|1|B|U|151
*
5TCU|1|B|A|178
5TCU|1|B|A|179
5TCU|1|B|G|180

Current chains

Chain B

23S RRNA

Nearby chains

Chain L6

50S ribosomal protein L23

Chain LG

50S ribosomal protein L34