J5_6B4V_003

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6B4V|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6B4V_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0822

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|B|C|47
6B4V|1|B|G|48
6B4V|1|B|A|49
6B4V|1|B|U|50
6B4V|1|B|G|51
6B4V|1|B|A|52
6B4V|1|B|A|53
6B4V|1|B|G|54
*
6B4V|1|B|C|116
6B4V|1|B|G|117
6B4V|1|B|A|118
6B4V|1|B|A|119
6B4V|1|B|U|120
6B4V|1|B|G|121
*
6B4V|1|B|C|130
6B4V|1|B|G|131
*
6B4V|1|B|C|148
6B4V|1|B|A|149
6B4V|1|B|C|150
*
6B4V|1|B|G|176
6B4V|1|B|G|177
6B4V|1|B|G|178

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34

Chain U

50S ribosomal protein L23