3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
6BOH|1|B|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BOH_003 not in the Motif Atlas
Homologous match to J5_9DFE_001
Geometric discrepancy: 0.0751
The information below is about J5_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6BOH|1|B|C|47
6BOH|1|B|G|48
6BOH|1|B|A|49
6BOH|1|B|U|50
6BOH|1|B|G|51
6BOH|1|B|A|52
6BOH|1|B|A|53
6BOH|1|B|G|54
*
6BOH|1|B|C|116
6BOH|1|B|G|117
6BOH|1|B|A|118
6BOH|1|B|A|119
6BOH|1|B|U|120
6BOH|1|B|G|121
*
6BOH|1|B|C|130
6BOH|1|B|G|131
*
6BOH|1|B|C|148
6BOH|1|B|A|149
6BOH|1|B|C|150
*
6BOH|1|B|G|176
6BOH|1|B|G|177
6BOH|1|B|G|178

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain EA
50S ribosomal protein L34

Coloring options:


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