J5_6BOH_003

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6BOH|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BOH_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0751

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BOH|1|B|C|47
6BOH|1|B|G|48
6BOH|1|B|A|49
6BOH|1|B|U|50
6BOH|1|B|G|51
6BOH|1|B|A|52
6BOH|1|B|A|53
6BOH|1|B|G|54
*
6BOH|1|B|C|116
6BOH|1|B|G|117
6BOH|1|B|A|118
6BOH|1|B|A|119
6BOH|1|B|U|120
6BOH|1|B|G|121
*
6BOH|1|B|C|130
6BOH|1|B|G|131
*
6BOH|1|B|C|148
6BOH|1|B|A|149
6BOH|1|B|C|150
*
6BOH|1|B|G|176
6BOH|1|B|G|177
6BOH|1|B|G|178

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34