J5_6BOH_003
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 6BOH|1|B|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6BOH_003 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.0751
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6BOH|1|B|C|47
6BOH|1|B|G|48
6BOH|1|B|A|49
6BOH|1|B|U|50
6BOH|1|B|G|51
6BOH|1|B|A|52
6BOH|1|B|A|53
6BOH|1|B|G|54
*
6BOH|1|B|C|116
6BOH|1|B|G|117
6BOH|1|B|A|118
6BOH|1|B|A|119
6BOH|1|B|U|120
6BOH|1|B|G|121
*
6BOH|1|B|C|130
6BOH|1|B|G|131
*
6BOH|1|B|C|148
6BOH|1|B|A|149
6BOH|1|B|C|150
*
6BOH|1|B|G|176
6BOH|1|B|G|177
6BOH|1|B|G|178
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain EA
- 50S ribosomal protein L34
Coloring options: