3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6BOH|1|GB|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BOH_015 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.0672
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6BOH|1|GB|C|584
6BOH|1|GB|G|585
6BOH|1|GB|A|586
6BOH|1|GB|C|587
6BOH|1|GB|U|588
6BOH|1|GB|C|589
*
6BOH|1|GB|G|668
6BOH|1|GB|G|669
6BOH|1|GB|A|670
6BOH|1|GB|C|671
*
6BOH|1|GB|G|809
6BOH|1|GB|U|810
6BOH|1|GB|U|811
6BOH|1|GB|C|812
*
6BOH|1|GB|G|1195
6BOH|1|GB|C|1196
*
6BOH|1|GB|G|1250
6BOH|1|GB|C|1251
6BOH|1|GB|G|1252
6BOH|1|GB|A|1253
6BOH|1|GB|A|1254
6BOH|1|GB|U|1255
6BOH|1|GB|G|1256

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain KC
50S ribosomal protein L35
Chain LB
50S ribosomal protein L4
Chain RB
50S ribosomal protein L15
Chain WB
50S ribosomal protein L20
Chain XB
50S ribosomal protein L21

Coloring options:


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