J5_6BY1_009
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6BY1|1|CA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6BY1_009 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0984
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6BY1|1|CA|C|584
6BY1|1|CA|G|585
6BY1|1|CA|A|586
6BY1|1|CA|C|587
6BY1|1|CA|U|588
6BY1|1|CA|U|589
*
6BY1|1|CA|A|668
6BY1|1|CA|G|669
6BY1|1|CA|A|670
6BY1|1|CA|C|671
*
6BY1|1|CA|G|809
6BY1|1|CA|U|810
6BY1|1|CA|U|811
6BY1|1|CA|C|812
*
6BY1|1|CA|G|1195
6BY1|1|CA|C|1196
*
6BY1|1|CA|G|1250
6BY1|1|CA|C|1251
6BY1|1|CA|G|1252
6BY1|1|CA|A|1253
6BY1|1|CA|A|1254
6BY1|1|CA|U|1255
6BY1|1|CA|G|1256
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain C4
- 50S ribosomal protein L35
- Chain CE
- 50S ribosomal protein L4
- Chain CL
- 50S ribosomal protein L15
- Chain CQ
- 50S ribosomal protein L20
- Chain CR
- 50S ribosomal protein L21
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