J5_6DNC_003

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6DNC|1|A|A|109, 6DNC|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6DNC_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1087

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6DNC|1|A|C|58
6DNC|1|A|A|59
6DNC|1|A|A|60
6DNC|1|A|G|61
*
6DNC|1|A|C|106
6DNC|1|A|G|107
6DNC|1|A|G|108
6DNC|1|A|A|109
6DNC|1|A|C|110
6DNC|1|A|G|111
6DNC|1|A|G|112
6DNC|1|A|G|113
*
6DNC|1|A|C|314
6DNC|1|A|A|315
6DNC|1|A|C|316
*
6DNC|1|A|G|337
6DNC|1|A|A|338
6DNC|1|A|C|339
*
6DNC|1|A|G|350
6DNC|1|A|G|351
6DNC|1|A|C|352
6DNC|1|A|A|353
6DNC|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S16

Chain GB

30S ribosomal protein S20

Chain O

50S ribosomal protein L14

Chain T

50S ribosomal protein L19