J5_6DNC_009
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6DNC|1|B|U|2076, 6DNC|1|B|U|2245, 6DNC|1|B|G|2428, 6DNC|1|B|G|2429, 6DNC|1|B|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DNC_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1333
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6DNC|1|B|U|2074
6DNC|1|B|U|2075
6DNC|1|B|U|2076
6DNC|1|B|A|2077
*
6DNC|1|B|U|2243
6DNC|1|B|U|2244
6DNC|1|B|U|2245
6DNC|1|B|G|2246
*
6DNC|1|B|C|2258
6DNC|1|B|U|2259
*
6DNC|1|B|A|2281
6DNC|1|B|G|2282
*
6DNC|1|B|C|2427
6DNC|1|B|G|2428
6DNC|1|B|G|2429
6DNC|1|B|A|2430
6DNC|1|B|U|2431
6DNC|1|B|A|2432
6DNC|1|B|A|2433
6DNC|1|B|A|2434
6DNC|1|B|A|2435
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain BA
- 50S ribosomal protein L28
- Chain D
- Transfer RNA; tRNA
- Chain F
- 50S ribosomal protein L2
- Chain GA
- 50S ribosomal protein L33
- Chain IA
- 50S ribosomal protein L35
- Chain P
- 50S ribosomal protein L15
Coloring options: