J5_6ERI_003
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6ERI|1|AA|A|543, 6ERI|1|AA|U|572
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ERI_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1693
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|AA|C|542
6ERI|1|AA|A|543
6ERI|1|AA|G|544
*
6ERI|1|AA|C|570
6ERI|1|AA|G|571
6ERI|1|AA|U|572
6ERI|1|AA|G|573
6ERI|1|AA|C|574
*
6ERI|1|AA|G|587
6ERI|1|AA|A|588
6ERI|1|AA|G|589
*
6ERI|1|AA|C|1282
6ERI|1|AA|U|1283
*
6ERI|1|AA|A|2031
6ERI|1|AA|G|2032
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L4, chloroplastic
- Chain AQ
- 50S ribosomal protein L20, chloroplastic
- Chain AR
- 50S ribosomal protein L21, chloroplastic
- Chain AS
- 50S ribosomal protein L22, chloroplastic
- Chain Aa
- 50S ribosomal protein L32, chloroplastic
Coloring options: