J5_6ERI_007
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUUC*GG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6ERI|1|AA|U|2090, 6ERI|1|AA|G|2445, 6ERI|1|AA|G|2446, 6ERI|1|AA|A|2447, 6ERI|1|AA|U|2448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ERI_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0828
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ERI|1|AA|U|2088
6ERI|1|AA|U|2089
6ERI|1|AA|U|2090
6ERI|1|AA|A|2091
*
6ERI|1|AA|U|2260
6ERI|1|AA|U|2261
6ERI|1|AA|U|2262
6ERI|1|AA|C|2263
*
6ERI|1|AA|G|2275
6ERI|1|AA|G|2276
*
6ERI|1|AA|C|2298
6ERI|1|AA|G|2299
*
6ERI|1|AA|C|2444
6ERI|1|AA|G|2445
6ERI|1|AA|G|2446
6ERI|1|AA|A|2447
6ERI|1|AA|U|2448
6ERI|1|AA|A|2449
6ERI|1|AA|A|2450
6ERI|1|AA|A|2451
6ERI|1|AA|A|2452
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L2, chloroplastic
- Chain AL
- 50S ribosomal protein L15, chloroplastic
- Chain AW
- 50S ribosomal protein L27, chloroplastic
- Chain AX
- 50S ribosomal protein L28, chloroplastic
- Chain Ad
- 50S ribosomal protein L35, chloroplastic
Coloring options: