J5_6FXC_008

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6FXC|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6FXC_008 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.104

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6FXC|1|BA|C|47
6FXC|1|BA|G|48
6FXC|1|BA|A|49
6FXC|1|BA|U|50
6FXC|1|BA|G|51
6FXC|1|BA|A|52
6FXC|1|BA|A|53
6FXC|1|BA|G|54
*
6FXC|1|BA|C|115
6FXC|1|BA|G|116
6FXC|1|BA|A|117
6FXC|1|BA|A|118
6FXC|1|BA|U|119
6FXC|1|BA|G|120
*
6FXC|1|BA|C|129
6FXC|1|BA|A|130
*
6FXC|1|BA|U|149
6FXC|1|BA|A|150
6FXC|1|BA|U|151
*
6FXC|1|BA|A|178
6FXC|1|BA|A|179
6FXC|1|BA|G|180

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23