3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6H58|1|a|A|109, 6H58|1|a|C|352
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6H58_015 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1056
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_58574.1
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6H58|1|a|C|58
6H58|1|a|A|59
6H58|1|a|A|60
6H58|1|a|G|61
*
6H58|1|a|C|106
6H58|1|a|G|107
6H58|1|a|G|108
6H58|1|a|A|109
6H58|1|a|C|110
6H58|1|a|G|111
6H58|1|a|G|112
6H58|1|a|G|113
*
6H58|1|a|C|314
6H58|1|a|A|315
6H58|1|a|C|316
*
6H58|1|a|G|337
6H58|1|a|A|338
6H58|1|a|C|339
*
6H58|1|a|G|350
6H58|1|a|G|351
6H58|1|a|C|352
6H58|1|a|A|353
6H58|1|a|G|354

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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