J5_6HRM_005
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6HRM|1|1|U|2761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_005 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0508
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|C|2090
6HRM|1|1|G|2091
6HRM|1|1|A|2092
6HRM|1|1|C|2093
6HRM|1|1|U|2094
6HRM|1|1|U|2095
*
6HRM|1|1|A|2174
6HRM|1|1|G|2175
6HRM|1|1|A|2176
6HRM|1|1|C|2177
*
6HRM|1|1|G|2315
6HRM|1|1|U|2316
6HRM|1|1|U|2317
6HRM|1|1|C|2318
*
6HRM|1|1|G|2701
6HRM|1|1|C|2702
*
6HRM|1|1|G|2756
6HRM|1|1|C|2757
6HRM|1|1|G|2758
6HRM|1|1|A|2759
6HRM|1|1|A|2760
6HRM|1|1|U|2761
6HRM|1|1|G|2762
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain e
- 50S ribosomal protein L35
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