J5_6HRM_008
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6HRM|1|1|U|3582, 6HRM|1|1|G|3934, 6HRM|1|1|G|3935, 6HRM|1|1|A|3936, 6HRM|1|1|U|3937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_008 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0794
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HRM|1|1|U|3580
6HRM|1|1|U|3581
6HRM|1|1|U|3582
6HRM|1|1|A|3583
*
6HRM|1|1|U|3749
6HRM|1|1|U|3750
6HRM|1|1|U|3751
6HRM|1|1|G|3752
*
6HRM|1|1|C|3764
6HRM|1|1|U|3765
*
6HRM|1|1|A|3787
6HRM|1|1|G|3788
*
6HRM|1|1|C|3933
6HRM|1|1|G|3934
6HRM|1|1|G|3935
6HRM|1|1|A|3936
6HRM|1|1|U|3937
6HRM|1|1|A|3938
6HRM|1|1|A|3939
6HRM|1|1|A|3940
6HRM|1|1|A|3941
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
Coloring options: