J5_6HTQ_001

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6HTQ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6HTQ_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1408

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|C|47
6HTQ|1|A|G|48
6HTQ|1|A|A|49
6HTQ|1|A|U|50
6HTQ|1|A|G|51
6HTQ|1|A|A|52
6HTQ|1|A|A|53
6HTQ|1|A|G|54
*
6HTQ|1|A|C|115
6HTQ|1|A|G|116
6HTQ|1|A|A|117
6HTQ|1|A|A|118
6HTQ|1|A|U|119
6HTQ|1|A|G|120
*
6HTQ|1|A|C|129
6HTQ|1|A|A|130
*
6HTQ|1|A|U|149
6HTQ|1|A|A|150
6HTQ|1|A|U|151
*
6HTQ|1|A|A|178
6HTQ|1|A|A|179
6HTQ|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain T

50S ribosomal protein L23