J5_6HTQ_011
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6HTQ|1|A|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HTQ_011 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1437
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6HTQ|1|A|C|628
6HTQ|1|A|G|629
6HTQ|1|A|A|630
6HTQ|1|A|G|631
6HTQ|1|A|U|632
6HTQ|1|A|U|633
*
6HTQ|1|A|A|715
6HTQ|1|A|G|716
6HTQ|1|A|A|717
6HTQ|1|A|C|718
*
6HTQ|1|A|G|856
6HTQ|1|A|U|857
6HTQ|1|A|U|858
6HTQ|1|A|C|859
*
6HTQ|1|A|G|1236
6HTQ|1|A|C|1237
*
6HTQ|1|A|G|1290
6HTQ|1|A|A|1291
6HTQ|1|A|G|1292
6HTQ|1|A|A|1293
6HTQ|1|A|A|1294
6HTQ|1|A|U|1295
6HTQ|1|A|G|1296
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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