J5_6N1D_010

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_010 not in the Motif Atlas

Homologous match to J5_6CZR_020

Geometric discrepancy: 0.1257

The information below is about J5_6CZR_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_42859.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-F-F-cWW-tSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|B16S|C|36
6N1D|1|B16S|U|37
6N1D|1|B16S|G|38
6N1D|1|B16S|G|39
*
6N1D|1|B16S|C|403
6N1D|1|B16S|U|404
6N1D|1|B16S|U|405
6N1D|1|B16S|G|406
*
6N1D|1|B16S|C|436
6N1D|1|B16S|U|437
6N1D|1|B16S|G|438
6N1D|1|B16S|A|440
6N1D|1|B16S|A|441
6N1D|1|B16S|C|442
*
6N1D|1|B16S|G|492
6N1D|1|B16S|G|493
6N1D|1|B16S|U|494
6N1D|1|B16S|A|495
6N1D|1|B16S|A|497
6N1D|1|B16S|U|498
6N1D|1|B16S|A|499
6N1D|1|B16S|G|500
*
6N1D|1|B16S|C|545
6N1D|1|B16S|G|546
6N1D|1|B16S|A|547
6N1D|1|B16S|G|548

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS04

30S ribosomal protein S4

Chain BS12

30S ribosomal protein S12