J5_6NUO_003

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6NUO|1|RA|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6NUO_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0819

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6NUO|1|RA|C|46
6NUO|1|RA|G|47
6NUO|1|RA|A|48
6NUO|1|RA|U|49
6NUO|1|RA|G|50
6NUO|1|RA|A|51
6NUO|1|RA|A|52
6NUO|1|RA|G|53
*
6NUO|1|RA|C|114
6NUO|1|RA|G|115
6NUO|1|RA|A|116
6NUO|1|RA|A|117
6NUO|1|RA|U|118
6NUO|1|RA|G|119
*
6NUO|1|RA|C|128
6NUO|1|RA|G|129
*
6NUO|1|RA|C|148
6NUO|1|RA|A|149
6NUO|1|RA|C|150
*
6NUO|1|RA|G|165
6NUO|1|RA|G|166
6NUO|1|RA|G|167

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23