J5_6O90_001

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

6O90|1|A|U|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O90_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1133

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6O90|1|A|C|48
6O90|1|A|G|49
6O90|1|A|A|50
6O90|1|A|U|51
6O90|1|A|G|52
6O90|1|A|A|53
6O90|1|A|A|54
6O90|1|A|G|55
*
6O90|1|A|C|116
6O90|1|A|G|117
6O90|1|A|A|118
6O90|1|A|A|119
6O90|1|A|U|120
6O90|1|A|G|121
*
6O90|1|A|C|130
6O90|1|A|A|131
*
6O90|1|A|U|150
6O90|1|A|A|151
6O90|1|A|C|152
*
6O90|1|A|G|178
6O90|1|A|A|179
6O90|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23