J5_6O90_003
3D structure
- PDB id
- 6O90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AAG*CGUGC*GAA*UA*UU
- Length
- 15 nucleotides
- Bulged bases
- 6O90|1|A|A|571, 6O90|1|A|U|599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O90_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.1416
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6O90|1|A|A|570
6O90|1|A|A|571
6O90|1|A|G|572
*
6O90|1|A|C|597
6O90|1|A|G|598
6O90|1|A|U|599
6O90|1|A|G|600
6O90|1|A|C|601
*
6O90|1|A|G|614
6O90|1|A|A|615
6O90|1|A|A|616
*
6O90|1|A|U|1298
6O90|1|A|A|1299
*
6O90|1|A|U|2031
6O90|1|A|U|2032
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
- Chain T
- 50S ribosomal protein L22
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