J5_6P5K_001
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6P5K|1|2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6P5K_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1236
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6P5K|1|2|C|30
6P5K|1|2|U|31
6P5K|1|2|U|32
6P5K|1|2|G|33
6P5K|1|2|U|34
*
6P5K|1|2|A|521
6P5K|1|2|A|522
6P5K|1|2|A|523
6P5K|1|2|U|524
6P5K|1|2|A|525
6P5K|1|2|A|526
6P5K|1|2|C|527
*
6P5K|1|2|G|558
6P5K|1|2|G|559
6P5K|1|2|A|560
6P5K|1|2|A|561
6P5K|1|2|U|562
6P5K|1|2|G|563
*
6P5K|1|2|C|592
6P5K|1|2|C|593
6P5K|1|2|A|594
6P5K|1|2|U|595
*
6P5K|1|2|A|641
6P5K|1|2|U|642
6P5K|1|2|A|643
6P5K|1|2|G|644
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Y
- uS12
- Chain Z
- eS24
- Chain f
- eS30
Coloring options: