3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
Length
26 nucleotides
Bulged bases
6P5K|1|2|C|593
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6P5K_001 not in the Motif Atlas
Homologous match to J5_8C3A_018
Geometric discrepancy: 0.1236
The information below is about J5_8C3A_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_19320.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6P5K|1|2|C|30
6P5K|1|2|U|31
6P5K|1|2|U|32
6P5K|1|2|G|33
6P5K|1|2|U|34
*
6P5K|1|2|A|521
6P5K|1|2|A|522
6P5K|1|2|A|523
6P5K|1|2|U|524
6P5K|1|2|A|525
6P5K|1|2|A|526
6P5K|1|2|C|527
*
6P5K|1|2|G|558
6P5K|1|2|G|559
6P5K|1|2|A|560
6P5K|1|2|A|561
6P5K|1|2|U|562
6P5K|1|2|G|563
*
6P5K|1|2|C|592
6P5K|1|2|C|593
6P5K|1|2|A|594
6P5K|1|2|U|595
*
6P5K|1|2|A|641
6P5K|1|2|U|642
6P5K|1|2|A|643
6P5K|1|2|G|644

Current chains

Chain 2
18S rRNA

Nearby chains

Chain K
uS4
Chain Y
uS12
Chain Z
eS24
Chain f
eS30

Coloring options:


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