3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
6Q95|1|1|A|532, 6Q95|1|1|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6Q95_002 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0862
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6Q95|1|1|C|531
6Q95|1|1|A|532
6Q95|1|1|G|533
*
6Q95|1|1|C|560
6Q95|1|1|G|561
6Q95|1|1|U|562
6Q95|1|1|G|563
6Q95|1|1|C|564
*
6Q95|1|1|G|577
6Q95|1|1|A|578
6Q95|1|1|G|579
*
6Q95|1|1|C|1261
6Q95|1|1|A|1262
*
6Q95|1|1|U|2017
6Q95|1|1|G|2018

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1493 s