J5_6S13_002

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6S13|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6S13_002 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1898

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6S13|1|A|C|47
6S13|1|A|G|48
6S13|1|A|A|49
6S13|1|A|U|50
6S13|1|A|G|51
6S13|1|A|A|52
6S13|1|A|A|53
6S13|1|A|G|54
*
6S13|1|A|C|115
6S13|1|A|G|116
6S13|1|A|A|117
6S13|1|A|A|118
6S13|1|A|U|119
6S13|1|A|G|120
*
6S13|1|A|C|129
6S13|1|A|A|130
*
6S13|1|A|U|149
6S13|1|A|A|150
6S13|1|A|U|151
*
6S13|1|A|A|178
6S13|1|A|A|179
6S13|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34