J5_6SGC_006
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6SGC|1|A1|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SGC_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0751
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|A1|C|30
6SGC|1|A1|U|31
6SGC|1|A1|U|32
6SGC|1|A1|G|33
6SGC|1|A1|U|34
*
6SGC|1|A1|A|521
6SGC|1|A1|A|522
6SGC|1|A1|A|523
6SGC|1|A1|U|524
6SGC|1|A1|A|525
6SGC|1|A1|A|526
6SGC|1|A1|C|527
*
6SGC|1|A1|G|558
6SGC|1|A1|G|559
6SGC|1|A1|A|560
6SGC|1|A1|A|561
6SGC|1|A1|U|562
6SGC|1|A1|G|563
*
6SGC|1|A1|C|592
6SGC|1|A1|C|593
6SGC|1|A1|A|594
6SGC|1|A1|U|595
*
6SGC|1|A1|A|641
6SGC|1|A1|U|642
6SGC|1|A1|A|643
6SGC|1|A1|G|644
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Y1
- uS12
- Chain f1
- 40S ribosomal protein S30
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