J5_6SKF_006
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAGUU*AGAC*GUUC*GC*GCGGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6SKF|1|BA|U|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SKF_006 not in the Motif Atlas
- Homologous match to J5_4V9F_003
- Geometric discrepancy: 0.133
- The information below is about J5_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SKF|1|BA|G|675
6SKF|1|BA|G|676
6SKF|1|BA|A|677
6SKF|1|BA|G|678
6SKF|1|BA|U|679
6SKF|1|BA|U|680
*
6SKF|1|BA|A|794
6SKF|1|BA|G|795
6SKF|1|BA|A|796
6SKF|1|BA|C|797
*
6SKF|1|BA|G|937
6SKF|1|BA|U|938
6SKF|1|BA|U|939
6SKF|1|BA|C|940
*
6SKF|1|BA|G|1331
6SKF|1|BA|C|1332
*
6SKF|1|BA|G|1385
6SKF|1|BA|C|1386
6SKF|1|BA|G|1387
6SKF|1|BA|G|1388
6SKF|1|BA|A|1389
6SKF|1|BA|U|1390
6SKF|1|BA|C|1391
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BO
- 50S ribosomal protein L15
- Chain BR
- 50S ribosomal protein L18e
- Chain Bd
- 50S ribosomal protein L32e
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