J5_6TC3_009
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6TC3|1|23S1|U|2076, 6TC3|1|23S1|G|2428, 6TC3|1|23S1|G|2429, 6TC3|1|23S1|A|2430, 6TC3|1|23S1|U|2431, 6TC3|1|23S1|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TC3_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0939
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6TC3|1|23S1|U|2074
6TC3|1|23S1|U|2075
6TC3|1|23S1|U|2076
6TC3|1|23S1|A|2077
*
6TC3|1|23S1|U|2243
6TC3|1|23S1|U|2244
6TC3|1|23S1|U|2245
6TC3|1|23S1|G|2246
*
6TC3|1|23S1|C|2258
6TC3|1|23S1|U|2259
*
6TC3|1|23S1|A|2281
6TC3|1|23S1|G|2282
*
6TC3|1|23S1|C|2427
6TC3|1|23S1|G|2428
6TC3|1|23S1|G|2429
6TC3|1|23S1|A|2430
6TC3|1|23S1|U|2431
6TC3|1|23S1|A|2432
6TC3|1|23S1|A|2433
6TC3|1|23S1|A|2434
6TC3|1|23S1|A|2435
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain L021
- 50S ribosomal protein L2
- Chain L151
- 50S ribosomal protein L15
- Chain L271
- 50S ribosomal protein L27
- Chain L281
- 50S ribosomal protein L28
- Chain L331
- 50S ribosomal protein L33
- Chain L351
- 50S ribosomal protein L35
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