J5_6U48_006
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6U48|1|CA|U|2076, 6U48|1|CA|G|2428, 6U48|1|CA|G|2429, 6U48|1|CA|A|2430, 6U48|1|CA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6U48_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0834
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6U48|1|CA|U|2074
6U48|1|CA|U|2075
6U48|1|CA|U|2076
6U48|1|CA|A|2077
*
6U48|1|CA|U|2243
6U48|1|CA|U|2244
6U48|1|CA|U|2245
6U48|1|CA|G|2246
*
6U48|1|CA|C|2258
6U48|1|CA|U|2259
*
6U48|1|CA|A|2281
6U48|1|CA|G|2282
*
6U48|1|CA|C|2427
6U48|1|CA|G|2428
6U48|1|CA|G|2429
6U48|1|CA|A|2430
6U48|1|CA|U|2431
6U48|1|CA|A|2432
6U48|1|CA|A|2433
6U48|1|CA|A|2434
6U48|1|CA|A|2435
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C2
- 50S ribosomal protein bL33
- Chain C4
- 50S ribosomal protein bL35
- Chain CC
- 50S ribosomal protein uL2
- Chain CM
- 50S ribosomal protein uL15
- Chain CX
- 50S ribosomal protein bL27
- Chain CY
- 50S ribosomal protein bL28
Coloring options: