J5_6V3D_003
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6V3D|1|AN1|U|1250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6V3D_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1046
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6V3D|1|AN1|C|582
6V3D|1|AN1|G|583
6V3D|1|AN1|A|584
6V3D|1|AN1|C|585
6V3D|1|AN1|U|586
6V3D|1|AN1|U|587
*
6V3D|1|AN1|A|666
6V3D|1|AN1|G|667
6V3D|1|AN1|A|668
6V3D|1|AN1|C|669
*
6V3D|1|AN1|G|807
6V3D|1|AN1|U|808
6V3D|1|AN1|U|809
6V3D|1|AN1|C|810
*
6V3D|1|AN1|G|1190
6V3D|1|AN1|C|1191
*
6V3D|1|AN1|G|1245
6V3D|1|AN1|C|1246
6V3D|1|AN1|G|1247
6V3D|1|AN1|A|1248
6V3D|1|AN1|A|1249
6V3D|1|AN1|U|1250
6V3D|1|AN1|G|1251
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
Coloring options: