J5_6W6P_005
3D structure
- PDB id
- 6W6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6W6P|1|A|G|1772, 6W6P|1|A|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6W6P_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1084
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
6W6P|1|A|G|1717
6W6P|1|A|C|1718
6W6P|1|A|A|1719
6W6P|1|A|A|1720
6W6P|1|A|A|1721
6W6P|1|A|A|1722
6W6P|1|A|U|1723
6W6P|1|A|G|1724
6W6P|1|A|A|1725
*
6W6P|1|A|U|1749
6W6P|1|A|G|1750
*
6W6P|1|A|C|1765
6W6P|1|A|C|1766
*
6W6P|1|A|G|1770
6W6P|1|A|U|1771
6W6P|1|A|G|1772
6W6P|1|A|A|1773
6W6P|1|A|A|1774
6W6P|1|A|U|1775
6W6P|1|A|A|1776
6W6P|1|A|G|1777
6W6P|1|A|G|1778
*
6W6P|1|A|C|2002
6W6P|1|A|A|2003
6W6P|1|A|C|2004
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: