J5_6WNT_005
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6WNT|1|4|U|2204, 6WNT|1|4|G|2556, 6WNT|1|4|G|2557, 6WNT|1|4|A|2558, 6WNT|1|4|U|2559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WNT_005 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1527
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WNT|1|4|U|2202
6WNT|1|4|U|2203
6WNT|1|4|U|2204
6WNT|1|4|A|2205
*
6WNT|1|4|U|2371
6WNT|1|4|U|2372
6WNT|1|4|U|2373
6WNT|1|4|G|2374
*
6WNT|1|4|C|2386
6WNT|1|4|U|2387
*
6WNT|1|4|A|2409
6WNT|1|4|G|2410
*
6WNT|1|4|C|2555
6WNT|1|4|G|2556
6WNT|1|4|G|2557
6WNT|1|4|A|2558
6WNT|1|4|U|2559
6WNT|1|4|A|2560
6WNT|1|4|A|2561
6WNT|1|4|A|2562
6WNT|1|4|A|2563
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
Coloring options: