J5_6XIQ_005

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAUU*AAUAG

Length

28 nucleotides

Bulged bases

6XIQ|1|2|A|477, 6XIQ|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XIQ_005 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.5683

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XIQ|1|2|C|31
6XIQ|1|2|U|32
6XIQ|1|2|U|33
6XIQ|1|2|G|34
6XIQ|1|2|U|35
*
6XIQ|1|2|A|473
6XIQ|1|2|A|474
6XIQ|1|2|A|475
6XIQ|1|2|U|476
6XIQ|1|2|A|477
6XIQ|1|2|A|478
6XIQ|1|2|C|479
*
6XIQ|1|2|G|509
6XIQ|1|2|G|510
6XIQ|1|2|A|511
6XIQ|1|2|A|512
6XIQ|1|2|U|513
6XIQ|1|2|G|514
*
6XIQ|1|2|C|543
6XIQ|1|2|A|544
6XIQ|1|2|A|545
6XIQ|1|2|U|546
6XIQ|1|2|U|547
*
6XIQ|1|2|A|591
6XIQ|1|2|A|592
6XIQ|1|2|U|593
6XIQ|1|2|A|594
6XIQ|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A