J5_6ZN5_001
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6ZN5|1|2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZN5_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1685
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZN5|1|2|C|30
6ZN5|1|2|U|31
6ZN5|1|2|U|32
6ZN5|1|2|G|33
6ZN5|1|2|U|34
*
6ZN5|1|2|A|521
6ZN5|1|2|A|522
6ZN5|1|2|A|523
6ZN5|1|2|U|524
6ZN5|1|2|A|525
6ZN5|1|2|A|526
6ZN5|1|2|C|527
*
6ZN5|1|2|G|558
6ZN5|1|2|G|559
6ZN5|1|2|A|560
6ZN5|1|2|A|561
6ZN5|1|2|U|562
6ZN5|1|2|G|563
*
6ZN5|1|2|C|592
6ZN5|1|2|C|593
6ZN5|1|2|A|594
6ZN5|1|2|U|595
*
6ZN5|1|2|A|641
6ZN5|1|2|U|642
6ZN5|1|2|A|643
6ZN5|1|2|G|644
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain X
- 40S ribosomal protein S23
- Chain e
- 40S ribosomal protein S30
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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